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Type :article
Subject :T Technology (General)
Main Author :Bahbibi Rahmatullah
Additional Authors :K.F. Tamrin
Title :Classification of synthetic platelets in digital holographic microscopy by neural network
Place of Production :Tanjong Malim
Publisher :Fakulti Seni, Komputeran dan Industri Kreatif
Year of Publication :2019
Corporate Name :Universiti Pendidikan Sultan Idris
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Abstract : Universiti Pendidikan Sultan Idris
Automatic classification of cell types and biological products are considered crucial in the field of hematology especially for early detection of diseases when the quantity that needs to be examined is considerably large. In a previous study, a cylindrical micro-channel was employed to mimic actual blood flow in the arteriole but it was found to cause astigmatism in the reconstructed holographic particle images. Additionally, correction of the images is important to avoid false disease detection. In this paper, we describe a new application of feed-forward backpropagation neural network for classifying images of astigmatic and non-astigmatic synthetic platelets that were obtained by digital holographic microscopy. Image cropping was performed to suppress noise, followed by image normalization to reduce variation in contrast/brightness. Using MATLABTM, a two-layer neural network with two class classifier was trained with these images to compute the weights of each layer and the performance was benchmarked against three performance indices. The results show that the present method was able to classify 1050 platelet images with 100% recognition rate for Class 1 (non-astigmatic) and 71.4% recognition rate  for Class 2 (astigmatic). The trained neural  network was then applied to a set of 9000 images. Finally,  digital  aberration  correction  by  complex-amplitude  correlation  was  successfully  applied  to  correct  for  the astigmatism

References

Beale, M., Hagan, M. T., & Demuth, H. B. (1992). Neural network toolbox. Neural Network Toolbox

The Math Works, 5, 25. Fraley, C., & Raftery, A. E. (2002). Model-based clustering, discriminant analysis, and density estimation. Journal of the American statistical Association, 97(458), 611-631.

Frauel, Y., & Javidi, B. (2001). Neural network for three-dimensional object recognition based on digital holography. Optics letters, 26(19), 1478-1480.

Ha, H., & Lee, S.-J. (2013). Hemodynamic features and platelet aggregation in a stenosed microchannel. Microvascular research, 90, 96-105.

Hartigan, J. A., & Wong, M. A. (1979). Algorithm AS 136: A k-means clustering algorithm. Applied statistics, 100-108.

Javidi, B., Moon, I., Yeom, S., & Carapezza, E. (2005). Three-dimensional imaging and recognition of microorganism using single-exposure on-line (SEOL) digital holography. Optics Express, 13(12), 4492-4506.

Kemper, B., & von Bally, G. (2008). Digital holographic microscopy for live cell applications and technical inspection. Applied optics, 47(4), A52-A61.

Khmaladze, A., Matz, R. L., Epstein, T., Jasensky, J., Holl, M. M. B., & Chen, Z. (2012). Cell volume changes during apoptosis monitored in real time using digital holographic  microscopy. Journal of structural biology, 178(3), 270-278.

Koch, C. G., Li, L., Sessler, D. I., Figueroa, P., Hoeltge, G. A., Mihaljevic, T., & Blackstone, E. H. (2008). Duration of red-cell  storage  and  complications  after  cardiac  surgery. New  England  Journal  of  Medicine,  358(12),  1229-1239. 

Ladhani, S., Lowe, B., Cole, A. O., Kowuondo, K., & Newton, C. R. (2002). Changes in white blood cells and platelets in children  with falciparum  malaria: relationship to disease  outcome. British journal of haematology, 119(3), 839-847.

Lee, S. J., Seo, K. W., Choi, Y. S., & Sohn, M. H. (2011). Three-dimensional motion measurements of free-swimming microorganisms using digital holographic microscopy. Measurement Science and Technology, 22(6), 064004.

Liu, R., Dey, D. K., Boss, D.,Marquet, P., & Javidi, B. (2011). Recognition and classification of red blood cells using digital holographic microscopy and data clustering with discriminant analysis. JOSA A, 28(6), 1204-1210.

Moon, I., Javidi, B., Yi, F., Boss, D., & Marquet, P. (2012). Automated statistical quantification of three-dimensional morphology and mean corpuscular hemoglobin of multiple red blood cells. Optics Express, 20(9), 10295-10309.

Pavillon,  N.,  Kühn,  J.,  Moratal,  C.,  Jourdain, P.,  Depeursinge,  C.,  Magistretti,  P.  J.,  &  Marquet,  P. (2012).  Early  cell death detection with digital holographic microscopy. PloS one, 7(1), e30912.

Schneider, B., Vanmeerbeeck, G., Stahl, R., Lagae, L., & Bienstman, P. (2015). Using neural networks for high-speed blood cell classification in a holographic-microscopy flow-cytometry system.Paper presented at the SPIE BiOS.

Shin,  D.,  Daneshpanah,  M.,  Anand,  A.,  &  Javidi,  B.  (2010).  Optofluidic  system  for  three-dimensional  sensing  and identification of micro-organisms with digital holographic microscopy. Optics letters, 35(23), 4066-4068.

Tamrin, K. F., & Rahmatullah, B. (2016). A review on noise suppression and aberration compensation in holographic particle image velocimetry. Cogent Physics, 3(1), 1142819.

Tamrin, K. F., Rahmatullah, B., & Samuri, S. M. (2014). Astigmatism compensation in digital holographic microscopy using  complex-amplitude  correlation.  Paper  presented  at  the  23rdScientific  Conference  of  the  Microscopy Society Malaysia Perak, Malaysia.

Tamrin, K. F., Rahmatullah, B., & Samuri, S. M. (2015a). Aberration compensation of holographic particle images using digital holographic microscopy. Journal of Modern Optics, 62(9), 701-711.

Tamrin, K. F., Rahmatullah, B., & Samuri, S. M. (2015b). An experimental investigation of three-dimensional particle aggregation using digital holographic microscopy. Optics and Lasers in Engineering, 68, 93-103.

Tinmouth, A., Fergusson, D., Yee, I. C., & Hébert, P. C. (2006). Clinical consequences of red cell storage in the critically ill. Transfusion, 46(11), 2014-2027.

Wormald, S. A., & Coupland, J. (2009). Particle image identification and correlation analysis in microscopic holographic particle image velocimetry. Applied optics, 48(33), 6400-6407.

Yarnell, J., Baker, I., Sweetnam, P., Bainton, D., O'brien, J., Whitehead, P., & Elwood, P. (1991). Fibrinogen, viscosity, and  white  blood  cell  count  are  major  risk  factors  for  ischemic  heart  disease.  The  Caerphilly  and  Speedwell collaborative heart disease studies. Circulation, 83(3), 836-844. 

 


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